J3_4V55_004

3D structure

PDB id

4V55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V55|1|AA|U|871, 4V55|1|AA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V55_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0713

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4V55|1|AA|C|826
4V55|1|AA|U|827
4V55|1|AA|U|828
4V55|1|AA|G|829
*
4V55|1|AA|C|857
4V55|1|AA|G|858
4V55|1|AA|G|859
4V55|1|AA|A|860
4V55|1|AA|G|861
*
4V55|1|AA|C|868
4V55|1|AA|G|869
4V55|1|AA|U|870
4V55|1|AA|U|871
4V55|1|AA|A|872
4V55|1|AA|A|873
4V55|1|AA|G|874

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AH

30S ribosomal protein S8

Chain AU

30S ribosomal protein S21