J3_4V55_046

3D structure

PDB id

4V55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V55_046 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0869

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V55|1|DB|C|1298
4V55|1|DB|G|1299
4V55|1|DB|G|1300
4V55|1|DB|A|1301
4V55|1|DB|A|1302
4V55|1|DB|G|1303
*
4V55|1|DB|C|1625
4V55|1|DB|A|1626
4V55|1|DB|G|1627
*
4V55|1|DB|C|1639
4V55|1|DB|A|1640
4V55|1|DB|A|1641
4V55|1|DB|G|1642

Current chains

Chain DB

23S rRNA

Nearby chains