J3_4V56_062

3D structure

PDB id

4V56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

4V56|1|CA|C|48, 4V56|1|CA|A|50, 4V56|1|CA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V56_062 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.095

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V56|1|CA|G|46
4V56|1|CA|C|47
4V56|1|CA|C|48
4V56|1|CA|U|49
4V56|1|CA|A|50
4V56|1|CA|A|51
4V56|1|CA|C|52
*
4V56|1|CA|G|359
4V56|1|CA|G|360
4V56|1|CA|G|361
4V56|1|CA|G|362
4V56|1|CA|A|363
4V56|1|CA|A|364
4V56|1|CA|U|365
4V56|1|CA|A|366
4V56|1|CA|U|367
*
4V56|1|CA|A|393
4V56|1|CA|G|394
4V56|1|CA|C|395

Current chains

Chain CA

16S rRNA

Nearby chains

Chain BH

50S ribosomal protein L9

Chain CL

30S ribosomal protein S12

Chain CP

30S ribosomal protein S16