J3_4V57_013

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

4V57|1|AA|U|1240, 4V57|1|AA|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V57_013 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.2447

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V57|1|AA|C|1237
4V57|1|AA|A|1238
4V57|1|AA|A|1239
4V57|1|AA|U|1240
4V57|1|AA|G|1241
*
4V57|1|AA|C|1296
4V57|1|AA|G|1297
4V57|1|AA|U|1298
4V57|1|AA|A|1299
4V57|1|AA|G|1300
4V57|1|AA|U|1301
4V57|1|AA|C|1302
4V57|1|AA|C|1303
*
4V57|1|AA|G|1334
4V57|1|AA|U|1335
4V57|1|AA|C|1336
4V57|1|AA|G|1337

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AM

30S ribosomal protein S13