J3_4V57_030

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V57|1|CA|U|871, 4V57|1|CA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V57_030 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0814

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4V57|1|CA|C|826
4V57|1|CA|U|827
4V57|1|CA|U|828
4V57|1|CA|G|829
*
4V57|1|CA|C|857
4V57|1|CA|G|858
4V57|1|CA|G|859
4V57|1|CA|A|860
4V57|1|CA|G|861
*
4V57|1|CA|C|868
4V57|1|CA|G|869
4V57|1|CA|U|870
4V57|1|CA|U|871
4V57|1|CA|A|872
4V57|1|CA|A|873
4V57|1|CA|G|874

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CB

30S ribosomal protein S2

Chain CH

30S ribosomal protein S8

Chain CU

30S ribosomal protein S21