J3_4V57_044

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V57_044 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.1982

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

4V57|1|DB|G|1055
4V57|1|DB|G|1056
4V57|1|DB|A|1057
*
4V57|1|DB|U|1081
4V57|1|DB|U|1082
4V57|1|DB|U|1083
4V57|1|DB|A|1084
4V57|1|DB|A|1085
4V57|1|DB|A|1086
4V57|1|DB|G|1087
*
4V57|1|DB|C|1102
4V57|1|DB|A|1103
4V57|1|DB|C|1104

Current chains

Chain DB

23S rRNA

Nearby chains

Chain D4

50S ribosomal protein L36

Chain DI

50S ribosomal protein L11