J3_4V57_052

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

4V57|1|AA|C|48, 4V57|1|AA|A|50, 4V57|1|AA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V57|1|AA|G|46
4V57|1|AA|C|47
4V57|1|AA|C|48
4V57|1|AA|U|49
4V57|1|AA|A|50
4V57|1|AA|A|51
4V57|1|AA|C|52
*
4V57|1|AA|G|359
4V57|1|AA|G|360
4V57|1|AA|G|361
4V57|1|AA|G|362
4V57|1|AA|A|363
4V57|1|AA|A|364
4V57|1|AA|U|365
4V57|1|AA|A|366
4V57|1|AA|U|367
*
4V57|1|AA|A|393
4V57|1|AA|G|394
4V57|1|AA|C|395

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AP

30S ribosomal protein S16