J3_4V5A_082

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

4V5A|1|DA|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5A_082 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0974

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4V5A|1|DA|C|297
4V5A|1|DA|G|298
4V5A|1|DA|A|299
4V5A|1|DA|A|300
4V5A|1|DA|G|301
*
4V5A|1|DA|C|316
4V5A|1|DA|G|317
4V5A|1|DA|C|318
4V5A|1|DA|C|319
4V5A|1|DA|A|320
4V5A|1|DA|G|321
4V5A|1|DA|A|322
4V5A|1|DA|G|323
4V5A|1|DA|A|324
4V5A|1|DA|G|325
*
4V5A|1|DA|C|337
4V5A|1|DA|G|338
4V5A|1|DA|U|339
4V5A|1|DA|A|340
4V5A|1|DA|G|341

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DF

50S RIBOSOMAL PROTEIN L4

Chain DY

50S RIBOSOMAL PROTEIN L24