J3_4V5B_011

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

4V5B|1|AB|U|2833, 4V5B|1|AB|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5B_011 not in the Motif Atlas

Homologous match to J3_5J7L_048

Geometric discrepancy: 0.2829

The information below is about J3_5J7L_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64069.1

Basepair signature

cWW-tHS-F-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V5B|1|AB|G|2812
4V5B|1|AB|A|2813
4V5B|1|AB|A|2814
4V5B|1|AB|C|2815
*
4V5B|1|AB|G|2831
4V5B|1|AB|U|2832
4V5B|1|AB|U|2833
4V5B|1|AB|G|2834
4V5B|1|AB|A|2835
4V5B|1|AB|U|2836
*
4V5B|1|AB|A|2882
4V5B|1|AB|A|2883
4V5B|1|AB|U|2884
4V5B|1|AB|G|2885
4V5B|1|AB|A|2886
4V5B|1|AB|A|2887
4V5B|1|AB|C|2888

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain A0

50S RIBOSOMAL PROTEIN L32

Chain AD

50S RIBOSOMAL PROTEIN L3

Chain AN

50S RIBOSOMAL PROTEIN L17