3D structure

PDB id
4V5B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of PDF binding helix in complex with the ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.74 Å

Loop

Sequence
GAAC*GUUGAU*AAUGAAC
Length
17 nucleotides
Bulged bases
4V5B|1|CB|U|2833, 4V5B|1|CB|A|2835
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V5B_032 not in the Motif Atlas
Homologous match to J3_5J7L_048
Geometric discrepancy: 0.284
The information below is about J3_5J7L_048
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64069.1
Basepair signature
cWW-tHS-F-F-F-cWW-cWW-F-F
Number of instances in this motif group
1

Unit IDs

4V5B|1|CB|G|2812
4V5B|1|CB|A|2813
4V5B|1|CB|A|2814
4V5B|1|CB|C|2815
*
4V5B|1|CB|G|2831
4V5B|1|CB|U|2832
4V5B|1|CB|U|2833
4V5B|1|CB|G|2834
4V5B|1|CB|A|2835
4V5B|1|CB|U|2836
*
4V5B|1|CB|A|2882
4V5B|1|CB|A|2883
4V5B|1|CB|U|2884
4V5B|1|CB|G|2885
4V5B|1|CB|A|2886
4V5B|1|CB|A|2887
4V5B|1|CB|C|2888

Current chains

Chain CB
23S RIBOSOMAL RNA

Nearby chains

Chain C0
50S RIBOSOMAL PROTEIN L32
Chain CD
50S RIBOSOMAL PROTEIN L3
Chain CN
50S RIBOSOMAL PROTEIN L17
Chain CS
50S RIBOSOMAL PROTEIN L22

Coloring options:


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