J3_4V5B_103

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GCAG*CGAAC*GAUGAC

Length

15 nucleotides

Bulged bases

4V5B|1|CB|A|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5B_103 not in the Motif Atlas

Geometric match to J3_8P9A_050

Geometric discrepancy: 0.2788

The information below is about J3_8P9A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_21998.1

Basepair signature

cWW-tSH-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V5B|1|CB|G|697
4V5B|1|CB|C|698
4V5B|1|CB|A|699
4V5B|1|CB|G|700
*
4V5B|1|CB|C|732
4V5B|1|CB|G|733
4V5B|1|CB|A|734
4V5B|1|CB|A|735
4V5B|1|CB|C|736
*
4V5B|1|CB|G|760
4V5B|1|CB|A|761
4V5B|1|CB|U|762
4V5B|1|CB|G|763
4V5B|1|CB|A|764
4V5B|1|CB|C|765

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CC

50S RIBOSOMAL PROTEIN L2