J3_4V5C_028

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V5C|1|CA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5C_028 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0717

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4V5C|1|CA|C|826
4V5C|1|CA|U|827
4V5C|1|CA|A|828
4V5C|1|CA|G|829
*
4V5C|1|CA|C|857
4V5C|1|CA|G|858
4V5C|1|CA|A|859
4V5C|1|CA|A|860
4V5C|1|CA|G|861
*
4V5C|1|CA|C|868
4V5C|1|CA|G|869
4V5C|1|CA|U|870
4V5C|1|CA|U|871
4V5C|1|CA|A|872
4V5C|1|CA|A|873
4V5C|1|CA|G|874

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CB

30S RIBOSOMAL PROTEIN S2

Chain CH

30S RIBOSOMAL PROTEIN S8