J3_4V5C_029
3D structure
- PDB id
- 4V5C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V5C_029 not in the Motif Atlas
- Homologous match to J3_4LFB_003
- Geometric discrepancy: 0.1092
- The information below is about J3_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V5C|1|CA|U|943
4V5C|1|CA|G|944
4V5C|1|CA|G|945
4V5C|1|CA|A|946
*
4V5C|1|CA|U|1235
4V5C|1|CA|A|1236
4V5C|1|CA|C|1237
*
4V5C|1|CA|G|1337
4V5C|1|CA|G|1338
4V5C|1|CA|A|1339
4V5C|1|CA|A|1340
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CG
- 30S RIBOSOMAL PROTEIN S7
- Chain CI
- 30S RIBOSOMAL PROTEIN S9
- Chain CM
- 30S RIBOSOMAL PROTEIN S13
- Chain CU
- 30S RIBOSOMAL PROTEIN THX
- Chain CV
- Transfer RNA; tRNA
- Chain CW
- Transfer RNA; tRNA
Coloring options: