J3_4V5C_062

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4V5C|1|CA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5C_062 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1534

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4V5C|1|CA|C|990
4V5C|1|CA|U|991
4V5C|1|CA|U|992
4V5C|1|CA|G|993
4V5C|1|CA|A|994
4V5C|1|CA|C|995
4V5C|1|CA|A|996
4V5C|1|CA|U|997
*
4V5C|1|CA|A|1044
4V5C|1|CA|C|1045
4V5C|1|CA|A|1046
4V5C|1|CA|G|1047
*
4V5C|1|CA|C|1210
4V5C|1|CA|U|1211
4V5C|1|CA|U|1212
4V5C|1|CA|A|1213
4V5C|1|CA|C|1214
4V5C|1|CA|G|1215

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CN

30S RIBOSOMAL PROTEIN S14