J3_4V5D_004

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V5D|1|AA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5D_004 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0744

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4V5D|1|AA|C|826
4V5D|1|AA|U|827
4V5D|1|AA|A|828
4V5D|1|AA|G|829
*
4V5D|1|AA|C|857
4V5D|1|AA|G|858
4V5D|1|AA|A|859
4V5D|1|AA|A|860
4V5D|1|AA|G|861
*
4V5D|1|AA|C|868
4V5D|1|AA|G|869
4V5D|1|AA|U|870
4V5D|1|AA|U|871
4V5D|1|AA|A|872
4V5D|1|AA|A|873
4V5D|1|AA|G|874

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S RIBOSOMAL PROTEIN S2

Chain AH

30S RIBOSOMAL PROTEIN S8