J3_4V5D_057
3D structure
- PDB id
- 4V5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
- Length
- 28 nucleotides
- Bulged bases
- 4V5D|1|BA|U|504, 4V5D|1|BA|G|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V5D_057 not in the Motif Atlas
- Homologous match to J3_4WF9_011
- Geometric discrepancy: 0.2335
- The information below is about J3_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V5D|1|BA|G|30
4V5D|1|BA|C|31
*
4V5D|1|BA|G|474
4V5D|1|BA|U|475
4V5D|1|BA|G|476
4V5D|1|BA|A|477
4V5D|1|BA|A|478
4V5D|1|BA|A|479
4V5D|1|BA|A|480
4V5D|1|BA|G|481
4V5D|1|BA|A|482
4V5D|1|BA|A|483
4V5D|1|BA|C|484
*
4V5D|1|BA|G|496
4V5D|1|BA|A|497
4V5D|1|BA|G|498
4V5D|1|BA|U|499
4V5D|1|BA|G|500
4V5D|1|BA|A|501
4V5D|1|BA|A|502
4V5D|1|BA|A|503
4V5D|1|BA|U|504
4V5D|1|BA|A|505
4V5D|1|BA|G|506
4V5D|1|BA|A|507
4V5D|1|BA|G|508
4V5D|1|BA|C|509
4V5D|1|BA|C|510
Current chains
- Chain BA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain BU
- 50S RIBOSOMAL PROTEIN L20
- Chain BW
- 50S RIBOSOMAL PROTEIN L22
- Chain BY
- 50S RIBOSOMAL PROTEIN L24
Coloring options: