J3_4V5D_069
3D structure
- PDB id
- 4V5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 4V5D|1|DA|C|34, 4V5D|1|DA|U|448, 4V5D|1|DA|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V5D_069 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.0882
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
4V5D|1|DA|C|32
4V5D|1|DA|U|33
4V5D|1|DA|C|34
4V5D|1|DA|G|35
*
4V5D|1|DA|C|445
4V5D|1|DA|G|446
4V5D|1|DA|A|447
4V5D|1|DA|U|448
4V5D|1|DA|A|449
4V5D|1|DA|G|450
4V5D|1|DA|C|451
4V5D|1|DA|G|452
4V5D|1|DA|C|453
4V5D|1|DA|A|454
4V5D|1|DA|C|455
4V5D|1|DA|C|456
4V5D|1|DA|A|457
4V5D|1|DA|G|458
4V5D|1|DA|U|459
4V5D|1|DA|A|460
4V5D|1|DA|C|461
*
4V5D|1|DA|G|468
4V5D|1|DA|G|469
4V5D|1|DA|A|470
4V5D|1|DA|A|471
4V5D|1|DA|A|472
4V5D|1|DA|G|473
Current chains
- Chain DA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain D7
- 50S RIBOSOMAL PROTEIN L34
- Chain DF
- 50S RIBOSOMAL PROTEIN L4
- Chain DU
- 50S RIBOSOMAL PROTEIN L20
- Chain DX
- 50S RIBOSOMAL PROTEIN L23
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