3D structure

PDB id
4V5G (explore in PDB, NAKB, or RNA 3D Hub)
Description
The crystal structure of the 70S ribosome bound to EF-Tu and tRNA
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
CUAG*CGAAG*CGUUAAG
Length
16 nucleotides
Bulged bases
4V5G|1|AA|U|871, 4V5G|1|AA|A|873
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V5G_004 not in the Motif Atlas
Homologous match to J3_4LFB_001
Geometric discrepancy: 0.115
The information below is about J3_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.4
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
3

Unit IDs

4V5G|1|AA|C|826
4V5G|1|AA|U|827
4V5G|1|AA|A|828
4V5G|1|AA|G|829
*
4V5G|1|AA|C|857
4V5G|1|AA|G|858
4V5G|1|AA|A|859
4V5G|1|AA|A|860
4V5G|1|AA|G|861
*
4V5G|1|AA|C|868
4V5G|1|AA|G|869
4V5G|1|AA|U|870
4V5G|1|AA|U|871
4V5G|1|AA|A|872
4V5G|1|AA|A|873
4V5G|1|AA|G|874

Current chains

Chain AA
16S RIBOSOMAL RNA

Nearby chains

Chain AB
30S RIBOSOMAL PROTEIN S2
Chain AH
30S RIBOSOMAL PROTEIN S8

Coloring options:


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