J3_4V5H_005

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5H_005 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.105

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

4V5H|1|AA|C|936
4V5H|1|AA|A|937
4V5H|1|AA|A|938
4V5H|1|AA|G|939
*
4V5H|1|AA|C|1344
4V5H|1|AA|U|1345
4V5H|1|AA|A|1346
4V5H|1|AA|G|1347
4V5H|1|AA|U|1348
4V5H|1|AA|A|1349
4V5H|1|AA|A|1350
*
4V5H|1|AA|U|1372
4V5H|1|AA|G|1373
4V5H|1|AA|A|1374
4V5H|1|AA|A|1375
4V5H|1|AA|U|1376
4V5H|1|AA|A|1377
4V5H|1|AA|C|1378
4V5H|1|AA|G|1379

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AG

30S RIBOSOMAL PROTEIN S7

Chain AI

30S RIBOSOMAL PROTEIN S9