J3_4V5H_015

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5H_015 not in the Motif Atlas

Homologous match to J3_7RQB_001

Geometric discrepancy: 0.1308

The information below is about J3_7RQB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65070.3

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4V5H|1|BB|G|30
4V5H|1|BB|C|31
*
4V5H|1|BB|G|474
4V5H|1|BB|C|475
4V5H|1|BB|G|476
4V5H|1|BB|A|477
4V5H|1|BB|A|478
4V5H|1|BB|A|479
4V5H|1|BB|A|480
4V5H|1|BB|G|481
*
4V5H|1|BB|C|509
4V5H|1|BB|C|510

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain BQ

50S RIBOSOMAL PROTEIN L20

Chain BS

50S RIBOSOMAL PROTEIN L22

Chain BU

50S RIBOSOMAL PROTEIN L24