J3_4V5H_023

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5H_023 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.1204

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

4V5H|1|BB|C|2091
4V5H|1|BB|U|2092
4V5H|1|BB|G|2093
*
4V5H|1|BB|C|2196
4V5H|1|BB|U|2197
4V5H|1|BB|A|2198
4V5H|1|BB|A|2199
4V5H|1|BB|C|2200
*
4V5H|1|BB|G|2223
4V5H|1|BB|G|2224
4V5H|1|BB|A|2225
4V5H|1|BB|C|2226
4V5H|1|BB|A|2227
4V5H|1|BB|G|2228

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain B0

50S RIBOSOMAL PROTEIN L28

Chain BC

50S RIBOSOMAL PROTEIN L2

Chain BH

50S RIBOSOMAL PROTEIN L9