J3_4V5J_029

3D structure

PDB id

4V5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V5J|1|CA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5J_029 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.078

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

4V5J|1|CA|C|826
4V5J|1|CA|U|827
4V5J|1|CA|A|828
4V5J|1|CA|G|829
*
4V5J|1|CA|C|857
4V5J|1|CA|G|858
4V5J|1|CA|A|859
4V5J|1|CA|A|860
4V5J|1|CA|G|861
*
4V5J|1|CA|C|868
4V5J|1|CA|G|869
4V5J|1|CA|U|870
4V5J|1|CA|U|871
4V5J|1|CA|A|872
4V5J|1|CA|A|873
4V5J|1|CA|G|874

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CB

30S RIBOSOMAL PROTEIN S2

Chain CH

30S RIBOSOMAL PROTEIN S8