J3_4V5J_064

3D structure

PDB id

4V5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4V5J|1|DA|U|504, 4V5J|1|DA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5J_064 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.2396

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

4V5J|1|DA|G|30
4V5J|1|DA|C|31
*
4V5J|1|DA|G|474
4V5J|1|DA|U|475
4V5J|1|DA|G|476
4V5J|1|DA|A|477
4V5J|1|DA|A|478
4V5J|1|DA|A|479
4V5J|1|DA|A|480
4V5J|1|DA|G|481
4V5J|1|DA|A|482
4V5J|1|DA|A|483
4V5J|1|DA|C|484
*
4V5J|1|DA|G|496
4V5J|1|DA|A|497
4V5J|1|DA|G|498
4V5J|1|DA|U|499
4V5J|1|DA|G|500
4V5J|1|DA|A|501
4V5J|1|DA|A|502
4V5J|1|DA|A|503
4V5J|1|DA|U|504
4V5J|1|DA|A|505
4V5J|1|DA|G|506
4V5J|1|DA|A|507
4V5J|1|DA|G|508
4V5J|1|DA|C|509
4V5J|1|DA|C|510

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DU

50S RIBOSOMAL PROTEIN L20

Chain DW

50S RIBOSOMAL PROTEIN L22

Chain DY

50S RIBOSOMAL PROTEIN L24