J3_4V5J_072

3D structure

PDB id

4V5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4V5J|1|CA|U|1212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5J_072 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1458

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4V5J|1|CA|C|990
4V5J|1|CA|U|991
4V5J|1|CA|U|992
4V5J|1|CA|G|993
4V5J|1|CA|A|994
4V5J|1|CA|C|995
4V5J|1|CA|A|996
4V5J|1|CA|U|997
*
4V5J|1|CA|A|1044
4V5J|1|CA|C|1045
4V5J|1|CA|A|1046
4V5J|1|CA|G|1047
*
4V5J|1|CA|C|1210
4V5J|1|CA|U|1211
4V5J|1|CA|U|1212
4V5J|1|CA|A|1213
4V5J|1|CA|C|1214
4V5J|1|CA|G|1215

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CN

30S RIBOSOMAL PROTEIN S14 TYPE Z

Chain CY

PEPTIDE CHAIN RELEASE FACTOR 2