J3_4V5L_028

3D structure

PDB id

4V5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4V5L|1|AA|U|1212, 4V5L|1|AA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5L_028 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1478

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4V5L|1|AA|C|990
4V5L|1|AA|U|991
4V5L|1|AA|U|992
4V5L|1|AA|G|993
4V5L|1|AA|A|994
4V5L|1|AA|C|995
4V5L|1|AA|A|996
4V5L|1|AA|U|997
*
4V5L|1|AA|A|1044
4V5L|1|AA|C|1045
4V5L|1|AA|A|1046
4V5L|1|AA|G|1047
*
4V5L|1|AA|C|1210
4V5L|1|AA|U|1211
4V5L|1|AA|U|1212
4V5L|1|AA|A|1213
4V5L|1|AA|C|1214
4V5L|1|AA|G|1215

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AC

30S RIBOSOMAL PROTEIN S3

Chain AN

30S RIBOSOMAL PROTEIN S14