J3_4V5M_012

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

4V5M|1|AA|U|1240

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5M_012 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1194

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V5M|1|AA|C|1237
4V5M|1|AA|A|1238
4V5M|1|AA|A|1239
4V5M|1|AA|U|1240
4V5M|1|AA|G|1241
*
4V5M|1|AA|C|1296
4V5M|1|AA|C|1297
4V5M|1|AA|C|1298
4V5M|1|AA|A|1299
4V5M|1|AA|G|1300
4V5M|1|AA|U|1301
4V5M|1|AA|U|1302
4V5M|1|AA|C|1303
*
4V5M|1|AA|G|1334
4V5M|1|AA|C|1335
4V5M|1|AA|C|1336
4V5M|1|AA|G|1337

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AG

30S RIBOSOMAL PROTEIN S7

Chain AM

30S RIBOSOMAL PROTEIN S13

Chain AU

30S RIBOSOMAL PROTEIN THX