J3_4V5M_018

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5M_018 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.1817

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

4V5M|1|BA|G|1055
4V5M|1|BA|G|1056
4V5M|1|BA|A|1057
*
4V5M|1|BA|U|1081
4V5M|1|BA|U|1082
4V5M|1|BA|U|1083
4V5M|1|BA|A|1084
4V5M|1|BA|A|1085
4V5M|1|BA|A|1086
4V5M|1|BA|G|1087
*
4V5M|1|BA|C|1102
4V5M|1|BA|A|1103
4V5M|1|BA|C|1104

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BK

50S RIBOSOMAL PROTEIN L11