J3_4V5M_024

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

CUC*GAG*UAGAAG

Length

12 nucleotides

Bulged bases

4V5M|1|BA|G|2334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5M_024 not in the Motif Atlas

Homologous match to J3_7RQB_011

Geometric discrepancy: 0.1136

The information below is about J3_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_91491.4

Basepair signature

cWW-F-tWW-tHW-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

4V5M|1|BA|C|2295
4V5M|1|BA|U|2296
4V5M|1|BA|C|2297
*
4V5M|1|BA|G|2321
4V5M|1|BA|A|2322
4V5M|1|BA|G|2323
*
4V5M|1|BA|U|2332
4V5M|1|BA|A|2333
4V5M|1|BA|G|2334
4V5M|1|BA|A|2335
4V5M|1|BA|A|2336
4V5M|1|BA|G|2337

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B0

50S RIBOSOMAL PROTEIN L27

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BS

50S RIBOSOMAL PROTEIN L18