J3_4V5M_025

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

4V5M|1|BA|A|2518, 4V5M|1|BA|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5M_025 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.0824

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

4V5M|1|BA|C|2517
4V5M|1|BA|A|2518
4V5M|1|BA|U|2519
4V5M|1|BA|C|2520
*
4V5M|1|BA|G|2545
4V5M|1|BA|U|2546
4V5M|1|BA|U|2547
*
4V5M|1|BA|A|2561
4V5M|1|BA|U|2562
4V5M|1|BA|U|2563
4V5M|1|BA|A|2564
4V5M|1|BA|A|2565
4V5M|1|BA|A|2566
4V5M|1|BA|G|2567

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BO

50S RIBOSOMAL PROTEIN L14