J3_4V5M_034

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

CCAG*CGAAC*GAUGAG

Length

15 nucleotides

Bulged bases

4V5M|1|BA|A|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5M_034 not in the Motif Atlas

Geometric match to J3_5TBW_005

Geometric discrepancy: 0.3052

The information below is about J3_5TBW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_33851.1

Basepair signature

cWW-tSH-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V5M|1|BA|C|697
4V5M|1|BA|C|698
4V5M|1|BA|A|699
4V5M|1|BA|G|700
*
4V5M|1|BA|C|732
4V5M|1|BA|G|733
4V5M|1|BA|A|734
4V5M|1|BA|A|735
4V5M|1|BA|C|736
*
4V5M|1|BA|G|760
4V5M|1|BA|A|761
4V5M|1|BA|U|762
4V5M|1|BA|G|763
4V5M|1|BA|A|764
4V5M|1|BA|G|765

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BD

50S RIBOSOMAL PROTEIN L2