J3_4V5M_036

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

GUUG*CUAAC*GGACAGC

Length

16 nucleotides

Bulged bases

4V5M|1|BA|A|2198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5M_036 not in the Motif Atlas

Geometric match to J3_4V9F_007

Geometric discrepancy: 0.2385

The information below is about J3_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97609.1

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-F-cWW-F

Number of instances in this motif group

1

Unit IDs

4V5M|1|BA|G|2090
4V5M|1|BA|U|2091
4V5M|1|BA|U|2092
4V5M|1|BA|G|2093
*
4V5M|1|BA|C|2196
4V5M|1|BA|U|2197
4V5M|1|BA|A|2198
4V5M|1|BA|A|2199
4V5M|1|BA|C|2200
*
4V5M|1|BA|G|2223
4V5M|1|BA|G|2224
4V5M|1|BA|A|2225
4V5M|1|BA|C|2226
4V5M|1|BA|A|2227
4V5M|1|BA|G|2228
4V5M|1|BA|C|2229

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B1

50S RIBOSOMAL PROTEIN L28

Chain BD

50S RIBOSOMAL PROTEIN L2