J3_4V5O_006

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUAUG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5O|1|AA|C|1133
4V5O|1|AA|C|1134
4V5O|1|AA|A|1135
4V5O|1|AA|G|1136
*
4V5O|1|AA|C|1553
4V5O|1|AA|U|1554
4V5O|1|AA|A|1555
4V5O|1|AA|G|1556
4V5O|1|AA|U|1557
4V5O|1|AA|A|1558
4V5O|1|AA|A|1559
*
4V5O|1|AA|U|1581
4V5O|1|AA|G|1582
4V5O|1|AA|A|1583
4V5O|1|AA|U|1584
4V5O|1|AA|U|1585
4V5O|1|AA|A|1586
4V5O|1|AA|U|1587
4V5O|1|AA|G|1588

Current chains

Chain AA

18S RRNA

Nearby chains

Chain A1

RIBOSOMAL PROTEIN S28E CONTAINING PROTEIN

Chain AG

RIBOSOMAL PROTEIN S7 CONTAINING PROTEIN

Chain AI

RPS16E, 40S RIBOSOMAL PROTEIN RPS16E

Chain AT

RPS19E