J3_4V5O_007
3D structure
- PDB id
- 4V5O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.93 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V5O_007 not in the Motif Atlas
- Homologous match to J3_4V88_036
- Geometric discrepancy: 0.1504
- The information below is about J3_4V88_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.2
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V5O|1|AA|U|1140
4V5O|1|AA|G|1141
4V5O|1|AA|G|1142
4V5O|1|AA|A|1143
*
4V5O|1|AA|U|1439
4V5O|1|AA|A|1440
4V5O|1|AA|C|1441
*
4V5O|1|AA|G|1546
4V5O|1|AA|G|1547
4V5O|1|AA|A|1548
4V5O|1|AA|A|1549
Current chains
- Chain AA
- 18S RRNA
Nearby chains
- Chain A8
- RPS25E
- Chain AG
- RIBOSOMAL PROTEIN S7 CONTAINING PROTEIN
- Chain AI
- RPS16E, 40S RIBOSOMAL PROTEIN RPS16E
- Chain AM
- RPS18E
- Chain AT
- RPS19E
- Chain BF
- EIF1
Coloring options: