J3_4V5O_010
3D structure
- PDB id
- 4V5O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.93 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V5O_010 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.1758
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
4V5O|1|AA|U|1255
4V5O|1|AA|C|1256
4V5O|1|AA|U|1257
4V5O|1|AA|U|1258
4V5O|1|AA|A|1259
4V5O|1|AA|G|1260
*
4V5O|1|AA|C|1299
4V5O|1|AA|G|1300
4V5O|1|AA|A|1301
4V5O|1|AA|G|1302
4V5O|1|AA|A|1303
4V5O|1|AA|C|1304
*
4V5O|1|AA|G|1390
4V5O|1|AA|C|1391
4V5O|1|AA|A|1392
4V5O|1|AA|A|1393
4V5O|1|AA|U|1394
4V5O|1|AA|A|1395
Current chains
- Chain AA
- 18S RRNA
Nearby chains
- Chain AC
- KH DOMAIN CONTAINING PROTEIN
- Chain AE
- RIBOSOMAL PROTEIN S5 CONTAINING PROTEIN
- Chain AI
- RPS16E, 40S RIBOSOMAL PROTEIN RPS16E
- Chain AJ
- RIBOSOMAL PROTEIN S10 CONTAINING PROTEIN
- Chain AN
- RPS29E
- Chain AV
- RPS17E
Coloring options: