J3_4V5O_011
3D structure
- PDB id
- 4V5O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.93 Å
Loop
- Sequence
- UG*UGUC*GUUAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V5O_011 not in the Motif Atlas
- Homologous match to J3_8P9A_081
- Geometric discrepancy: 0.1482
- The information below is about J3_8P9A_081
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76043.3
- Basepair signature
- cWW-cWW-tSS-F-F-F-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V5O|1|AA|U|1265
4V5O|1|AA|G|1266
*
4V5O|1|AA|U|1275
4V5O|1|AA|G|1276
4V5O|1|AA|U|1277
4V5O|1|AA|C|1278
*
4V5O|1|AA|G|1290
4V5O|1|AA|U|1291
4V5O|1|AA|U|1292
4V5O|1|AA|A|1293
4V5O|1|AA|A|1294
Current chains
- Chain AA
- 18S RRNA
Nearby chains
- Chain AB
- RPS0E
- Chain AE
- RIBOSOMAL PROTEIN S5 CONTAINING PROTEIN
- Chain AV
- RPS17E
- Chain AZ
- RPS21E
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