3D structure

PDB id
4V5O (explore in PDB, NAKB, or RNA 3D Hub)
Description
CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.
Experimental method
X-RAY DIFFRACTION
Resolution
3.93 Å

Loop

Sequence
CUC*GUAUG*CAAAG
Length
13 nucleotides
Bulged bases
4V5O|1|AA|U|1054, 4V5O|1|AA|A|1065
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V5O|1|AA|C|1015
4V5O|1|AA|U|1016
4V5O|1|AA|C|1017
*
4V5O|1|AA|G|1051
4V5O|1|AA|U|1052
4V5O|1|AA|A|1053
4V5O|1|AA|U|1054
4V5O|1|AA|G|1055
*
4V5O|1|AA|C|1062
4V5O|1|AA|A|1063
4V5O|1|AA|A|1064
4V5O|1|AA|A|1065
4V5O|1|AA|G|1066

Current chains

Chain AA
18S RRNA

Nearby chains

Chain A5
RIBOSOMAL PROTEIN S26E CONTAINING PROTEIN
Chain A6
RPS27E
Chain AB
RPS0E
Chain AE
RIBOSOMAL PROTEIN S5 CONTAINING PROTEIN
Chain AH
RIBOSOMAL PROTEIN S8 CONTAINING PROTEIN
Chain AZ
RPS21E

Coloring options:

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