J3_4V5O_034
3D structure
- PDB id
- 4V5O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.93 Å
Loop
- Sequence
- AAC*GGACUA*UGGAAGUUU
- Length
- 18 nucleotides
- Bulged bases
- 4V5O|1|BA|U|1384, 4V5O|1|BA|U|1385
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V5O_034 not in the Motif Atlas
- Homologous match to J3_8C3A_086
- Geometric discrepancy: 0.2239
- The information below is about J3_8C3A_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_80847.1
- Basepair signature
- cWW-tWH-F-tSW-cWW-tWS-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
4V5O|1|BA|A|1308
4V5O|1|BA|A|1309
4V5O|1|BA|C|1310
*
4V5O|1|BA|G|1356
4V5O|1|BA|G|1357
4V5O|1|BA|A|1358
4V5O|1|BA|C|1359
4V5O|1|BA|U|1360
4V5O|1|BA|A|1361
*
4V5O|1|BA|U|1378
4V5O|1|BA|G|1379
4V5O|1|BA|G|1380
4V5O|1|BA|A|1381
4V5O|1|BA|A|1382
4V5O|1|BA|G|1383
4V5O|1|BA|U|1384
4V5O|1|BA|U|1385
4V5O|1|BA|U|1386
Current chains
- Chain BA
- 18S RRNA
Nearby chains
- Chain BG
- RIBOSOMAL PROTEIN S7 CONTAINING PROTEIN
- Chain BI
- RPS16E, 40S RIBOSOMAL PROTEIN RPS16E
- Chain BJ
- RIBOSOMAL PROTEIN S10 CONTAINING PROTEIN
- Chain BR
- RACK1
- Chain BV
- RPS17E
Coloring options: