3D structure

PDB id
4V5O (explore in PDB, NAKB, or RNA 3D Hub)
Description
CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.
Experimental method
X-RAY DIFFRACTION
Resolution
3.93 Å

Loop

Sequence
AAC*GGACUA*UGGAAGUUU
Length
18 nucleotides
Bulged bases
4V5O|1|BA|U|1384, 4V5O|1|BA|U|1385
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V5O_034 not in the Motif Atlas
Homologous match to J3_8C3A_086
Geometric discrepancy: 0.2239
The information below is about J3_8C3A_086
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_80847.1
Basepair signature
cWW-tWH-F-tSW-cWW-tWS-F-cWW-cWW-F
Number of instances in this motif group
2

Unit IDs

4V5O|1|BA|A|1308
4V5O|1|BA|A|1309
4V5O|1|BA|C|1310
*
4V5O|1|BA|G|1356
4V5O|1|BA|G|1357
4V5O|1|BA|A|1358
4V5O|1|BA|C|1359
4V5O|1|BA|U|1360
4V5O|1|BA|A|1361
*
4V5O|1|BA|U|1378
4V5O|1|BA|G|1379
4V5O|1|BA|G|1380
4V5O|1|BA|A|1381
4V5O|1|BA|A|1382
4V5O|1|BA|G|1383
4V5O|1|BA|U|1384
4V5O|1|BA|U|1385
4V5O|1|BA|U|1386

Current chains

Chain BA
18S RRNA

Nearby chains

Chain BG
RIBOSOMAL PROTEIN S7 CONTAINING PROTEIN
Chain BI
RPS16E, 40S RIBOSOMAL PROTEIN RPS16E
Chain BJ
RIBOSOMAL PROTEIN S10 CONTAINING PROTEIN
Chain BR
RACK1
Chain BV
RPS17E

Coloring options:


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