J3_4V5P_004

3D structure

PDB id

4V5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V5P|1|AA|U|871, 4V5P|1|AA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5P_004 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0829

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

4V5P|1|AA|C|826
4V5P|1|AA|U|827
4V5P|1|AA|A|828
4V5P|1|AA|G|829
*
4V5P|1|AA|C|857
4V5P|1|AA|G|858
4V5P|1|AA|A|859
4V5P|1|AA|A|860
4V5P|1|AA|G|861
*
4V5P|1|AA|C|868
4V5P|1|AA|G|869
4V5P|1|AA|U|870
4V5P|1|AA|U|871
4V5P|1|AA|A|872
4V5P|1|AA|A|873
4V5P|1|AA|G|874

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AB

30S RIBOSOMAL PROTEIN S2

Chain AH

30S RIBOSOMAL PROTEIN S8