J3_4V5P_024

3D structure

PDB id

4V5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CC*GUGGAU*AAUCG

Length

13 nucleotides

Bulged bases

4V5P|1|BA|G|2833

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5P_024 not in the Motif Atlas

Homologous match to J3_9DFE_019

Geometric discrepancy: 0.0943

The information below is about J3_9DFE_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4V5P|1|BA|C|2814
4V5P|1|BA|C|2815
*
4V5P|1|BA|G|2831
4V5P|1|BA|U|2832
4V5P|1|BA|G|2833
4V5P|1|BA|G|2834
4V5P|1|BA|A|2835
4V5P|1|BA|U|2836
*
4V5P|1|BA|A|2882
4V5P|1|BA|A|2883
4V5P|1|BA|U|2884
4V5P|1|BA|C|2885
4V5P|1|BA|G|2886

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B5

50S RIBOSOMAL PROTEIN L32

Chain BE

50S RIBOSOMAL PROTEIN L3

Chain BR

50S RIBOSOMAL PROTEIN L17