J3_4V5P_061
3D structure
- PDB id
- 4V5P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGG*CUAGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V5P_061 not in the Motif Atlas
- Homologous match to J3_4LFB_015
- Geometric discrepancy: 0.0503
- The information below is about J3_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.5
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V5P|1|CA|C|586
4V5P|1|CA|G|587
4V5P|1|CA|G|588
*
4V5P|1|CA|C|651
4V5P|1|CA|U|652
4V5P|1|CA|A|653
4V5P|1|CA|G|654
4V5P|1|CA|A|655
*
4V5P|1|CA|U|751
4V5P|1|CA|G|752
4V5P|1|CA|A|753
4V5P|1|CA|C|754
4V5P|1|CA|G|755
Current chains
- Chain CA
- 16S RRNA
Nearby chains
- Chain CH
- 30S RIBOSOMAL PROTEIN S8
- Chain CL
- 30S RIBOSOMAL PROTEIN S12
- Chain CO
- 30S RIBOSOMAL PROTEIN S15
- Chain CQ
- 30S RIBOSOMAL PROTEIN S17
Coloring options: