3D structure

PDB id
4V5Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CUUGACAU*ACAG*CUUACG
Length
18 nucleotides
Bulged bases
4V5Q|1|CA|U|1211, 4V5Q|1|CA|U|1212, 4V5Q|1|CA|C|1214
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V5Q_072 not in the Motif Atlas
Homologous match to J3_4LFB_016
Geometric discrepancy: 0.1628
The information below is about J3_4LFB_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76475.2
Basepair signature
cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
Number of instances in this motif group
2

Unit IDs

4V5Q|1|CA|C|990
4V5Q|1|CA|U|991
4V5Q|1|CA|U|992
4V5Q|1|CA|G|993
4V5Q|1|CA|A|994
4V5Q|1|CA|C|995
4V5Q|1|CA|A|996
4V5Q|1|CA|U|997
*
4V5Q|1|CA|A|1044
4V5Q|1|CA|C|1045
4V5Q|1|CA|A|1046
4V5Q|1|CA|G|1047
*
4V5Q|1|CA|C|1210
4V5Q|1|CA|U|1211
4V5Q|1|CA|U|1212
4V5Q|1|CA|A|1213
4V5Q|1|CA|C|1214
4V5Q|1|CA|G|1215

Current chains

Chain CA
16S RRNA

Nearby chains

Chain CN
30S RIBOSOMAL PROTEIN S14

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1859 s