3D structure

PDB id
4V5R (explore in PDB, NAKB, or RNA 3D Hub)
Description
The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CUAG*CGAAG*CGUUAAG
Length
16 nucleotides
Bulged bases
4V5R|1|CA|U|871, 4V5R|1|CA|A|873
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V5R_029 not in the Motif Atlas
Homologous match to J3_4LFB_001
Geometric discrepancy: 0.0813
The information below is about J3_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_02285.1
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
2

Unit IDs

4V5R|1|CA|C|826
4V5R|1|CA|U|827
4V5R|1|CA|A|828
4V5R|1|CA|G|829
*
4V5R|1|CA|C|857
4V5R|1|CA|G|858
4V5R|1|CA|A|859
4V5R|1|CA|A|860
4V5R|1|CA|G|861
*
4V5R|1|CA|C|868
4V5R|1|CA|G|869
4V5R|1|CA|U|870
4V5R|1|CA|U|871
4V5R|1|CA|A|872
4V5R|1|CA|A|873
4V5R|1|CA|G|874

Current chains

Chain CA
16S RRNA

Nearby chains

Chain CB
30S RIBOSOMAL PROTEIN S2
Chain CH
30S RIBOSOMAL PROTEIN S8

Coloring options:


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