J3_4V5Y_030

3D structure

PDB id

4V5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4.45 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V5Y|1|CA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5Y_030 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0795

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4V5Y|1|CA|C|826
4V5Y|1|CA|U|827
4V5Y|1|CA|U|828
4V5Y|1|CA|G|829
*
4V5Y|1|CA|C|857
4V5Y|1|CA|G|858
4V5Y|1|CA|G|859
4V5Y|1|CA|A|860
4V5Y|1|CA|G|861
*
4V5Y|1|CA|C|868
4V5Y|1|CA|G|869
4V5Y|1|CA|U|870
4V5Y|1|CA|U|871
4V5Y|1|CA|A|872
4V5Y|1|CA|A|873
4V5Y|1|CA|G|874

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CB

30S ribosomal protein S2

Chain CH

30S ribosomal protein S8

Chain CU

30S ribosomal protein S21