J3_4V5Y_069

3D structure

PDB id

4V5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4.45 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5Y_069 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.098

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V5Y|1|DB|G|1424
4V5Y|1|DB|G|1425
4V5Y|1|DB|G|1426
4V5Y|1|DB|A|1427
4V5Y|1|DB|C|1428
4V5Y|1|DB|G|1429
*
4V5Y|1|DB|C|1564
4V5Y|1|DB|C|1565
*
4V5Y|1|DB|G|1568
4V5Y|1|DB|A|1569
4V5Y|1|DB|A|1570
4V5Y|1|DB|A|1571
4V5Y|1|DB|A|1572
4V5Y|1|DB|G|1573
4V5Y|1|DB|C|1574

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DC

50S ribosomal protein L2