J3_4V61_006
3D structure
- PDB id
- 4V61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.4 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 4V61|1|AA|A|924, 4V61|1|AA|G|925, 4V61|1|AA|A|927
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V61_006 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.1815
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V61|1|AA|U|904
4V61|1|AA|U|905
4V61|1|AA|U|906
4V61|1|AA|A|907
4V61|1|AA|A|908
4V61|1|AA|U|909
4V61|1|AA|U|910
4V61|1|AA|C|911
*
4V61|1|AA|G|922
4V61|1|AA|A|923
4V61|1|AA|A|924
4V61|1|AA|G|925
4V61|1|AA|A|926
4V61|1|AA|A|927
4V61|1|AA|C|928
4V61|1|AA|C|929
4V61|1|AA|U|930
4V61|1|AA|U|931
4V61|1|AA|A|932
4V61|1|AA|C|933
*
4V61|1|AA|G|1169
4V61|1|AA|G|1170
4V61|1|AA|C|1171
4V61|1|AA|G|1172
4V61|1|AA|A|1173
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AJ
- Ribosomal Protein S10
- Chain AM
- Ribosomal Protein S13
- Chain AN
- Ribosomal Protein S14
- Chain AS
- Ribosomal Protein S19
Coloring options: