J3_4V61_009
3D structure
- PDB id
- 4V61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.4 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V61_009 not in the Motif Atlas
- Homologous match to J3_5J7L_008
- Geometric discrepancy: 0.132
- The information below is about J3_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4V61|1|AA|C|1012
4V61|1|AA|G|1013
4V61|1|AA|U|1014
4V61|1|AA|C|1015
4V61|1|AA|A|1016
4V61|1|AA|G|1017
*
4V61|1|AA|C|1056
4V61|1|AA|G|1057
4V61|1|AA|C|1058
4V61|1|AA|A|1059
4V61|1|AA|A|1060
4V61|1|AA|C|1061
4V61|1|AA|C|1062
*
4V61|1|AA|G|1135
4V61|1|AA|A|1136
4V61|1|AA|U|1137
4V61|1|AA|G|1138
4V61|1|AA|A|1139
4V61|1|AA|C|1140
4V61|1|AA|G|1141
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AB
- Ribosomal Protein S2
- Chain AC
- Ribosomal Protein S3
- Chain AE
- Ribosomal Protein S5
- Chain AI
- Ribosomal Protein S9
- Chain AJ
- Ribosomal Protein S10
- Chain AN
- Ribosomal Protein S14
Coloring options: