J3_4V61_010

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

4V61|1|AA|A|1050

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V61_010 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.1402

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

4V61|1|AA|U|1022
4V61|1|AA|G|1023
*
4V61|1|AA|U|1032
4V61|1|AA|G|1033
4V61|1|AA|U|1034
4V61|1|AA|U|1035
4V61|1|AA|G|1036
*
4V61|1|AA|C|1047
4V61|1|AA|G|1048
4V61|1|AA|C|1049
4V61|1|AA|A|1050
4V61|1|AA|A|1051

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AB

Ribosomal Protein S2

Chain AE

Ribosomal Protein S5