J3_4V61_014

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CCAG*CGAAC*GAUGAG

Length

15 nucleotides

Bulged bases

4V61|1|BA|A|775

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V61_014 not in the Motif Atlas

Geometric match to J3_5TBW_005

Geometric discrepancy: 0.307

The information below is about J3_5TBW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_33851.1

Basepair signature

cWW-tSH-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V61|1|BA|C|708
4V61|1|BA|C|709
4V61|1|BA|A|710
4V61|1|BA|G|711
*
4V61|1|BA|C|743
4V61|1|BA|G|744
4V61|1|BA|A|745
4V61|1|BA|A|746
4V61|1|BA|C|747
*
4V61|1|BA|G|771
4V61|1|BA|A|772
4V61|1|BA|U|773
4V61|1|BA|G|774
4V61|1|BA|A|775
4V61|1|BA|G|776

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

Ribosomal Protein L2