J3_4V61_017

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

UAAG*CCGAAAC*GUA

Length

14 nucleotides

Bulged bases

4V61|1|BA|A|1645, 4V61|1|BA|A|1646

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V61_017 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.2837

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

4V61|1|BA|U|1327
4V61|1|BA|A|1328
4V61|1|BA|A|1329
4V61|1|BA|G|1330
*
4V61|1|BA|C|1641
4V61|1|BA|C|1642
4V61|1|BA|G|1643
4V61|1|BA|A|1644
4V61|1|BA|A|1645
4V61|1|BA|A|1646
4V61|1|BA|C|1647
*
4V61|1|BA|G|1656
4V61|1|BA|U|1657
4V61|1|BA|A|1658

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B4

Ribosomal Protein L34