J3_4V63_013

3D structure

PDB id

4V63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for translation termination on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

4V63|1|AA|U|1240, 4V63|1|AA|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V63_013 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1531

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

4V63|1|AA|C|1237
4V63|1|AA|A|1238
4V63|1|AA|A|1239
4V63|1|AA|U|1240
4V63|1|AA|G|1241
*
4V63|1|AA|C|1296
4V63|1|AA|C|1297
4V63|1|AA|C|1298
4V63|1|AA|A|1299
4V63|1|AA|G|1300
4V63|1|AA|U|1301
4V63|1|AA|U|1302
4V63|1|AA|C|1303
*
4V63|1|AA|G|1334
4V63|1|AA|C|1335
4V63|1|AA|C|1336
4V63|1|AA|G|1337

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AM

30S ribosomal protein S13

Chain AU

30S ribosomal protein Thx